Downloads

XNAT Development VM

• Virtualized XNAT 1.5.2 [VirtualBox] ( 2.6 GB )

  XNAT 1.5.2 with NRG patches and bugfixes

  XNAT Virtual Machine Installation Notes

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  Date: October 20, 2011    
  

  VM Username: vmuser
  Password: xnat

  XNAT Username: admin
  Password: admin

  Notes:

  • This XNAT installation contains numerous patches developed by the NRG for the Cognitive Neuroscience Lab at Harvard University.
  • Please do not forget to start Tomcat: sudo /etc/init.d/tomcat start
  • To enable https, please remove the current certificate from the keystore and generate a new SSL certificate, using the commands below.

  XNAT Quick How To:

  General Help:

  • cd ~/xnat-install
  • ./setup.py --help

  Remove current installation:

  • cd ~/xnat-install
  • ./setup.py -a clean -i /XNAT/Source

  Reinstall XNAT (see ~/.xnat_install):

  • cd ~/xnat-install
  • ./setup.py -i /XNAT/Source

  Update XNAT with the latest patches:

  • cd /XNAT/Source/.hg/patches
  • hg pull -u
  • cd ~/xnat-install
  • ./setup.py -a update -i /XNAT/Source

  SSL How To:

                 1. Create a new SSL certificate (set the password to 'changeme' when prompted and "Your Name" to the NAME OF THE HOST, otherwise Java XNAT tools won't work [see the highlighted string below]):

  openssl genrsa -passout pass:changeme -des3 -out tomcat.pem 2048

   

  echo '[ req ]

   default_bits           = 2048

   default_keyfile        = tomcat.pem

   distinguished_name     = req_distinguished_name

   attributes             = req_attributes

   prompt                 = no

   output_password        = changeme

   

   [ req_distinguished_name ]

   C                      = US

   ST                     = MA

   L                      = Cambridge

   O                      = Organization

   OU                     = Group

   CN                     = HOSTNAME

   emailAddress           = your@email.com

   

   [ req_attributes ]

   challengePassword      = changeme

  ' > ~/.openssl_config

   

  openssl req -config /home/vmuser/.openssl_config -passin pass:changeme -new -x509 -key tomcat.pem -out tomcatcert.pem -days 1095
  

  cp tomcat.pem tomcatcert.pem  /NRG/Applications/tomcat/conf/

   

                 2. Import Tomcat's SSL certificate into the JRE trusted CA store (as root)

  keytool -import -trustcacerts -keystore /usr/lib/jvm/java-6-sun/jre/lib/security/cacerts -storepass changeit -no-prompt -alias tomcatcert.pem -file /NRG/Applications/tomcat/conf/tomcatcert.pem

   

                 2.a. To delete an old SSL certificate from the JRE trusted CA store, run the following command (as root):

            keytool -delete -trustcacerts -keystore /usr/lib/jvm/java-6-sun/jre/lib/security/cacerts -storepass changeit -alias tomcatcert.pem

   

  Send questions and comments to help@neuroinfo.org

  
  
• Virtualized XNAT 1.4 RC1 DVD v0.9.4 ( 1.38 GB )
• Virtualized XNAT 1.4 beta DVD v0.9.4  ( 1.04 GB )

  XNAT SVN/stable-1.4 r212 - VM v.0.9.4 - SDK v.0.8.8 - bfw SVN/trunk r78

  XNAT Virtual Machine and SDK Changelog

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  Version: 0.9.4     Date: November 1, 2008     Link: Download

  • XNAT SVN/stable-1.4 r212
  • VM v.0.9.4
  • SDK v.0.8.8
  • BF SVN/trunk r78

  VM

  • Fixed Make.sh (works w/ bfw r78)

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  Version: 0.9.3     Date: October 8, 2008     Link: Download

  • XNAT SVN/stable-1.4 r212
  • VM v.0.9.3
  • SDK v.0.8.8
  • BF SVN/trunk r78

  VM

  • Added Installation Guide - README.pdf
  • Fixed dicomserver archive spec path
  • Fixed path error in crontab (cron --> scripts)
  • Added deletion of persistent net file on shutdown
  • Updated Bash Framework to r78 and added man page

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  Version: 0.9.2     Date: October 8, 2008     Link: Download

  • XNAT SVN/stable-1.4 r212
  • VM v.0.9.2
  • SDK v.0.8.8
  • BF SVN/trunk r69

  VM

  • Largely rewritten init scripts (maintenance)
  • Fixed order of init script invocation (fix permissions problems)
  • Updated XNAT to r212 and Bash Framework to r69 (fix Make.sh & Xnat.rerouteLogs)

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  Version: 0.9.1     Date: October 1, 2008     Link: Download

  • XNAT SVN/stable-1.4 r211
  • VM v.0.9.1
  • SDK v.0.8.8
  • BF SVN/trunk r68

  VM

  • Created the missing '/opt/local/shared/Logs/xnat' directory which fixes the broken '/usr/local/tomcat/webapps/xnat/logs' link.
  • Fixed the '/opt/local/cron/ifconfig_hb' script to correctly update the IP address in the XNAT database.
  • Added a new cron job to backup the XNAT database every night at 12AM. Backups go into '/opt/local/shared/Dumps'. The default database is 'nrg'. The backup script is at '/opt/local/cron/dump_db'.
  
  
• SDK v.0.8.8  ( 102.12 MB )